Some changes to allow training with kaggle data

normalization/blazepose_mapping.py

@@ -61,20 +61,25 @@ def map_blazepose_keypoint(column):
     return f"{mapped}_{hand}{suffix}"
 
 
-def map_blazepose_df(df):
+def map_blazepose_df(df, rename=True):
+    to_drop = []
+    if rename:
+        renamings = {}
+        for column in df.columns:
+            mapped_column = map_blazepose_keypoint(column)
+            if mapped_column:
+                renamings[column] = mapped_column
+            else:
+                to_drop.append(column)
+        df = df.rename(columns=renamings)
+
     for index, row in df.iterrows():
 
+        sequence_size = len(row["leftEar_Y"])
         lsx = row["leftShoulder_X"]
         rsx = row["rightShoulder_X"]
         lsy = row["leftShoulder_Y"]
         rsy = row["rightShoulder_Y"]
-        # convert all to list
-        lsx = lsx[1:-1].split(",")
-        rsx = rsx[1:-1].split(",")
-        lsy = lsy[1:-1].split(",")
-        rsy = rsy[1:-1].split(",")
-        sequence_size = len(lsx)
-
         neck_x = []
         neck_y = []
         # Treat each element of the sequence (analyzed frame) individually
@@ -84,4 +89,5 @@ def map_blazepose_df(df):
         df.loc[index, "neck_X"] = str(neck_x)
         df.loc[index, "neck_Y"] = str(neck_y)
 
-    return df
+    df.drop(columns=to_drop, inplace=True)
+    return df

normalization/main.py

@@ -5,30 +5,30 @@ import pandas as pd
 from normalization.hand_normalization import normalize_hands_full
 from normalization.body_normalization import normalize_body_full
 
-DATASET_PATH = './data/wlasl'
+DATASET_PATH = './data/processed'
 # Load the dataset
-df = pd.read_csv(os.path.join(DATASET_PATH, "WLASL100_train.csv"), encoding="utf-8")
+df = pd.read_csv(os.path.join(DATASET_PATH, "spoter_train.csv"), encoding="utf-8")
 
 print(df.head())
 print(df.columns)
 
 # Retrieve metadata
-video_size_heights = df["video_height"].to_list()
-video_size_widths = df["video_width"].to_list()
+# video_size_heights = df["video_height"].to_list()
+# video_size_widths = df["video_width"].to_list()
 
 # Delete redundant (non-related) properties
-del df["video_height"]
-del df["video_width"]
+# del df["video_height"]
+# del df["video_width"]
 
 # Temporarily remove other relevant metadata
 labels = df["labels"].to_list()
-video_fps = df["fps"].to_list()
+signs = df["sign"].to_list()
+
 del df["labels"]
-del df["fps"]
-del df["split"]
-del df["video_id"]
-del df["label_name"]
-del df["length"]
+del df["sign"]
+del df["path"]
+del df["participant_id"]
+del df["sequence_id"]
 
 # Convert the strings into lists
 
@@ -41,7 +41,7 @@ for column in df.columns:
 
 # Perform the normalizations
 df = normalize_hands_full(df)
-df, invalid_row_indexes = normalize_body_full(df)
+# df, invalid_row_indexes = normalize_body_full(df)
 
 # Clear lists of items from deleted rows
 # labels = [t for i, t in enumerate(labels) if i not in invalid_row_indexes]
@@ -49,6 +49,6 @@ df, invalid_row_indexes = normalize_body_full(df)
 
 # Return the metadata back to the dataset
 df["labels"] = labels
-df["fps"] = video_fps
+df["sign"] = signs
 
-df.to_csv(os.path.join(DATASET_PATH, "wlasl_train_norm.csv"), encoding="utf-8", index=False)
+df.to_csv(os.path.join(DATASET_PATH, "spoter_train_norm.csv"), encoding="utf-8", index=False)

preprocessing.py

@@ -1,5 +1,5 @@
 from argparse import ArgumentParser
-from preprocessing.create_wlasl_landmarks_dataset import parse_create_args, create
+from preprocessing.create_fingerspelling_dataset import parse_create_args, create
 from preprocessing.extract_mediapipe_landmarks import parse_extract_args, extract
 
 

preprocessing/create_fingerspelling_dataset.py

@@ -0,0 +1,172 @@
+import os
+import os.path as op
+import json
+import shutil
+
+import cv2
+import mediapipe as mp
+import numpy as np
+import pandas as pd
+from utils import get_logger
+from tqdm.auto import tqdm
+from sklearn.model_selection import train_test_split
+from normalization.blazepose_mapping import map_blazepose_df
+
+BASE_DATA_FOLDER = 'data/'
+
+mp_drawing = mp.solutions.drawing_utils
+mp_drawing_styles = mp.solutions.drawing_styles
+mp_hands = mp.solutions.hands
+mp_holistic = mp.solutions.holistic
+pose_landmarks = mp_holistic.PoseLandmark
+hand_landmarks = mp_holistic.HandLandmark
+
+
+def get_landmarks_names():
+    '''
+    Returns landmark names for mediapipe holistic model
+    '''
+    pose_lmks = ','.join([f'{lmk.name.lower()}_x,{lmk.name.lower()}_y' for lmk in pose_landmarks])
+    left_hand_lmks = ','.join([f'left_hand_{lmk.name.lower()}_x,left_hand_{lmk.name.lower()}_y'
+                               for lmk in hand_landmarks])
+    right_hand_lmks = ','.join([f'right_hand_{lmk.name.lower()}_x,right_hand_{lmk.name.lower()}_y'
+                                for lmk in hand_landmarks])
+    lmks_names = f'{pose_lmks},{left_hand_lmks},{right_hand_lmks}'
+    return lmks_names
+
+
+def convert_to_str(arr, precision=6):
+    if isinstance(arr, np.ndarray):
+        values = []
+        for val in arr:
+            if val == 0:
+                values.append('0')
+            else:
+                values.append(f'{val:.{precision}f}')
+        return f"[{','.join(values)}]"
+    else:
+        return str(arr)
+
+
+def parse_create_args(parser):
+    parser.add_argument('--landmarks-dataset', '-lmks', required=True,
+                        help='Path to folder with landmarks npy files. \
+                            You need to run `extract_mediapipe_landmarks.py` script first')
+    parser.add_argument('--dataset-folder', '-df', default='data/wlasl',
+                        help='Path to folder where original `WLASL_v0.3.json` and `id_to_label.json` are stored. \
+                            Note that final CSV files will be saved in this folder too.')
+    parser.add_argument('--videos-folder', '-videos', default=None,
+                        help='Path to folder with videos. If None, then no information of videos (fps, length, \
+                            width and height) will be stored in final csv file')
+    parser.add_argument('--num-classes', '-nc', default=100, type=int, help='Number of classes to use in WLASL dataset')
+    parser.add_argument('--create-new-split', action='store_true')
+    parser.add_argument('--test-size', '-ts', default=0.25, type=float,
+                        help='Test split percentage size. Only required if --create-new-split is set')
+
+
+# python3 preprocessing.py --landmarks-dataset=data/landmarks -videos data/wlasl/videos
+def create(args):
+    logger = get_logger(__name__)
+
+    landmarks_dataset = args.landmarks_dataset
+    videos_folder = args.videos_folder
+    dataset_folder = args.dataset_folder
+    num_classes = args.num_classes
+    test_size = args.test_size
+
+    os.makedirs(dataset_folder, exist_ok=True)
+
+    # shutil.copy(os.path.join(BASE_DATA_FOLDER, 'wlasl/id_to_label.json'), dataset_folder)
+    # shutil.copy(os.path.join(BASE_DATA_FOLDER, 'wlasl/WLASL_v0.3.json'), dataset_folder)
+
+    # get files in landmarks_dataset folder
+    landmarks_files = os.listdir(landmarks_dataset)
+
+    video_data = []
+    for i, file in enumerate(tqdm(landmarks_files)):
+
+        # split by !
+        label = file.split('!')[0]
+        subset = file.split('!')[1].split('.')[0]
+        
+        # remove npy and set mp4
+        video_id = file.replace('.npy', "")
+
+
+        video_dict = {'video_id': video_id,
+                        'label_name': label,
+                        'split': subset}
+        
+        if videos_folder is not None:
+            cap = cv2.VideoCapture(op.join(videos_folder, f'{video_id}.mp4'))
+            if not cap.isOpened():
+                logger.warning(f'Video {video_id}.mp4 not found')
+                continue
+            width = cap.get(cv2.CAP_PROP_FRAME_WIDTH)
+            height = cap.get(cv2.CAP_PROP_FRAME_HEIGHT)
+            fps = cap.get(cv2.CAP_PROP_FPS)
+            length = cap.get(cv2.CAP_PROP_FRAME_COUNT) / float(cap.get(cv2.CAP_PROP_FPS))
+            video_info = {'video_width': width,
+                            'video_height': height,
+                            'fps': fps,
+                            'length': length}
+            video_dict.update(video_info)
+        video_data.append(video_dict)
+
+    df_video = pd.DataFrame(video_data)
+    video_ids = df_video['video_id'].unique()
+    lmks_data = []
+    lmks_names = get_landmarks_names().split(',')
+
+    # get labels from df_video
+    labels = df_video['label_name'].unique()
+    # map labels to ids
+    label_to_id = {label: i for i, label in enumerate(labels)}
+
+    # add label_id column to df_video
+    df_video['labels'] = df_video['label_name'].map(label_to_id)
+
+    # export to json file as id to label
+    id_to_label = {i: label for label, i in label_to_id.items()}
+    with open(op.join(dataset_folder, 'id_to_label.json'), 'w') as f:
+        json.dump(id_to_label, f, indent=4)
+
+    for video_id in video_ids:
+        lmk_fn = op.join(landmarks_dataset, f'{video_id}.npy')
+        if not op.exists(lmk_fn):
+            logger.warning(f'{lmk_fn} file not found. Skipping')
+            continue
+        lmk = np.load(lmk_fn).T
+        lmks_dict = {'video_id': video_id}
+        for lmk_, name in zip(lmk, lmks_names):
+            lmks_dict[name] = lmk_
+        lmks_data.append(lmks_dict)
+
+    df_lmks = pd.DataFrame(lmks_data)
+    print(df_lmks)
+    df = pd.merge(df_video, df_lmks)
+    print(df)
+    aux_columns = ['split', 'video_id', 'labels', 'label_name']
+    if videos_folder is not None:
+        aux_columns += ['video_width', 'video_height', 'fps', 'length']
+    df_aux = df[aux_columns]
+    df = map_blazepose_df(df)
+    df = pd.concat([df, df_aux], axis=1)
+    if args.create_new_split:
+        df_train, df_test = train_test_split(df, test_size=test_size, stratify=df['labels'], random_state=42)
+    else:
+        print(df['split'].unique())
+        df_train = df[(df['split'] == 'train') | (df['split'] == 'val')]
+        df_test = df[df['split'] == 'test']
+
+    print(f'Num classes: {num_classes}')
+    print(df_train['labels'].value_counts())
+    assert set(df_train['labels'].unique()) == set(df_test['labels'].unique(
+    )), 'The labels for train and test dataframe are different. We recommend to download the dataset again, or to use \
+        the --create-new-split flag'
+    for split, df_split in zip(['train', 'val'],
+                               [df_train, df_test]):
+        fn_out = op.join(dataset_folder, f'fingerspelling_{split}.csv')
+        (df_split.reset_index(drop=True)
+                 .applymap(convert_to_str)
+                 .to_csv(fn_out, index=False))

preprocessing/create_google_asl_landmarks_dataset.py

@@ -4,6 +4,8 @@ import pandas as pd
 from tqdm.auto import tqdm
 import json
 
+from normalization.blazepose_mapping import map_blazepose_df
+
 def create(train_landmark_files, train_csv, dataset_folder, test_size):
     os.makedirs(dataset_folder, exist_ok=True)
 
@@ -17,15 +19,15 @@ def create(train_landmark_files, train_csv, dataset_folder, test_size):
     mapping = {
             'pose_0': 'nose',
             'pose_1': 'leftEye',
-            'pose_2': 'rightEye',
-            'pose_3': 'leftEar',
-            'pose_4': 'rightEar',
-            'pose_5': 'leftShoulder',
-            'pose_6': 'rightShoulder',
-            'pose_7': 'leftElbow',
-            'pose_8': 'rightElbow',
-            'pose_9': 'leftWrist',
-            'pose_10': 'rightWrist',
+            'pose_4': 'rightEye',
+            'pose_7': 'leftEar',
+            'pose_8': 'rightEar',
+            'pose_11': 'leftShoulder',
+            'pose_12': 'rightShoulder',
+            'pose_13': 'leftElbow',
+            'pose_14': 'rightElbow',
+            'pose_15': 'leftWrist',
+            'pose_16': 'rightWrist',
 
             'left_hand_0': 'wrist_left',
             'left_hand_1': 'thumbCMC_left',
@@ -77,7 +79,7 @@ def create(train_landmark_files, train_csv, dataset_folder, test_size):
         columns.append(f'{v}_X')
         columns.append(f'{v}_Y')
 
-    for _, row in tqdm(train_df.head(6000).iterrows(), total=6000):
+    for _, row in tqdm(train_df.head(10000).iterrows(), total=10000):
         path, participant_id, sequence_id, sign = row['path'], row['participant_id'], row['sequence_id'], row['sign']
         parquet_file = os.path.join(train_landmark_files, str(participant_id), f"{sequence_id}.parquet")
 
@@ -136,6 +138,7 @@ def create(train_landmark_files, train_csv, dataset_folder, test_size):
         video_data.append(new_landmark_data)
 
     video_data = pd.concat(video_data, axis=0, ignore_index=True)
+    video_data = map_blazepose_df(video_data, rename=False)
     video_data.to_csv(os.path.join(dataset_folder, 'spoter.csv'), index=False)
 
 train_landmark_files = 'data/train_landmark_files'

preprocessing/create_wlasl_landmarks_dataset.py

@@ -110,6 +110,7 @@ def create(args):
                               'length': length}
                 video_dict.update(video_info)
             video_data.append(video_dict)
+            
     df_video = pd.DataFrame(video_data)
     video_ids = df_video['video_id'].unique()
     lmks_data = []
@@ -126,9 +127,7 @@ def create(args):
         lmks_data.append(lmks_dict)
 
     df_lmks = pd.DataFrame(lmks_data)
-    print(df_lmks)
     df = pd.merge(df_video, df_lmks)
-    print(df)
     aux_columns = ['split', 'video_id', 'labels', 'label_name']
     if videos_folder is not None:
         aux_columns += ['video_width', 'video_height', 'fps', 'length']

preprocessing/extract_mediapipe_landmarks.py

@@ -132,6 +132,12 @@ def extract(args):
         ret, image_orig = cap.read()
         height, width = image_orig.shape[:2]
         landmarks_video = []
+
+        # make sure fps is 20 by determining the number of frames to be skipped
+        frame_rate = int(cap.get(cv2.CAP_PROP_FPS))
+        frame_skip = (frame_rate // 20) - 1
+        
+
         with tqdm(total=int(cap.get(cv2.CAP_PROP_FRAME_COUNT))) as pbar:
             with mp_holistic.Holistic(
                 static_image_mode=False,
@@ -145,6 +151,9 @@ def extract(args):
                         print(e)
                         landmarks = get_landmarks(image_orig, holistic, debug=True)
                     ret, image_orig = cap.read()
+                    for _ in range(frame_skip):
+                        ret, image_orig = cap.read()
+                        pbar.update(1)
                     landmarks_video.append(landmarks)
                     pbar.update(1)
         landmarks_video = np.vstack(landmarks_video)

preprocessing/split_dataset.py

@@ -8,7 +8,6 @@ dataset = "data/processed/spoter.csv"
 
 # read the dataset
 df = pd.read_csv(dataset)
-df = map_blazepose_df(df)
 
 with open("data/sign_to_prediction_index_map.json", "r") as f:
     sign_to_prediction_index_max = json.load(f)

requirements.txt

@@ -1,7 +1,6 @@
 pandas
 bokeh==2.4.3
 boto3>=1.9
-clearml==1.6.4
 ipywidgets==8.0.4
 matplotlib==3.5.3
 mediapipe==0.8.11
@@ -9,6 +8,7 @@ notebook==6.5.2
 opencv-python==4.6.0.66
 plotly==5.11.0
 scikit-learn==1.0.2
+clearml==1.10.3
 torch
 torchvision
 tqdm==4.54.1

train.py

@@ -15,7 +15,7 @@ from torchvision import transforms
 from torch.utils.data import DataLoader
 from pathlib import Path
 import copy
-
+import numpy as np
 from datasets import CzechSLRDataset, SLREmbeddingDataset, collate_fn_triplet_padd, collate_fn_padd
 from models import SPOTER, SPOTER_EMBEDDINGS, train_epoch, evaluate, train_epoch_embedding, \
     train_epoch_embedding_online, evaluate_embedding
@@ -32,7 +32,7 @@ except ImportError:
     pass
 
 
-PROJECT_NAME = "spoter"
+PROJECT_NAME = "SpoterEmbedding"
 CLEARML = "clearml"
 
 

train.sh

@@ -1,22 +1,21 @@
 #!/bin/sh
 python -m train \
 	--save_checkpoints_every 10 \
-    --experiment_name "augment_rotate_75_x8" \
+    --experiment_name "basic" \
     --epochs 300 \
 	--optimizer "ADAM" \
-	--lr 0.001 \
+	--lr 0.0001 \
     --batch_size 16 \
-	--dataset_name "processed" \
+	--dataset_name "GoogleWLASL" \
 	--training_set_path "spoter_train.csv" \
 	--validation_set_path "spoter_test.csv" \
 	--vector_length 32 \
 	--epoch_iters -1 \
-	--scheduler_factor 0 \
-	--hard_triplet_mining "in_batch" \
+	--scheduler_factor 0.2 \
+	--hard_triplet_mining "None" \
 	--filter_easy_triplets \
-	--triplet_loss_margin 1 \
+	--triplet_loss_margin 2 \
 	--dropout 0.2 \
-	--augmentations_prob=0.75 \
-	--hard_mining_scheduler_triplets_threshold=0 \
-	--normalize_embeddings \
-    --num_classes 100 \
+    --tracker=clearml \
+    --dataset_loader=clearml \
+	--dataset_project="SpoterEmbedding"